Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69528.1Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355. (447 aa)    
Predicted Functional Partners:
ABK76040.1
acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.
 
   
 0.900
ABK70268.1
Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.
 
   
 0.899
ABK76233.1
Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.
 
   
 0.890
ABK72679.1
Toluate 1,2-dioxygenase electron transfer component; Identified by match to protein family HMM PF00106; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF07729; match to protein family HMM PF08021.
 
 
 0.873
ABK72776.1
Toluate 1,2-dioxygenase beta subunit; Identified by match to protein family HMM PF00866.
 
 0.862
ABK72622.1
Conserved hypothetical protein.
       0.861
ABK70760.1
Conserved hypothetical protein.
       0.861
ABK75786.1
Carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627.
 
   
 0.807
ABK73240.1
Amidohydrolase 2; Identified by match to protein family HMM PF04909.
 
 
 0.762
ABK72509.1
Conserved hypothetical protein.
  
     0.734
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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