ABK72622.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABK72622.1

Conserved hypothetical protein. (115 aa)

Predicted Functional Partners:

ABK69528.1

0.896

ABK70760.1

0.896

ABK76040.1

0.896

ABK70268.1

0.896

ABK76233.1

0.832

ABK75786.1

0.831

ABK74019.1

0.655

ABK74697.1

0.552

ABK73240.1

0.487

ABK74702.1

0.427

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69528.1	ABK70268.1	MSMEG_4840	MSMEG_4845	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.924
ABK69528.1	ABK70760.1	MSMEG_4840	MSMEG_4843	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Conserved hypothetical protein.	0.896
ABK69528.1	ABK72622.1	MSMEG_4840	MSMEG_4841	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Conserved hypothetical protein.	0.896
ABK69528.1	ABK73240.1	MSMEG_4840	MSMEG_4837	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Amidohydrolase 2; Identified by match to protein family HMM PF04909.	0.738
ABK69528.1	ABK74019.1	MSMEG_4840	MSMEG_4836	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	FadE12_1; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.559
ABK69528.1	ABK74697.1	MSMEG_4840	MSMEG_4838	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Hypothetical protein; Identified by Glimmer2; putative.	0.550
ABK69528.1	ABK74702.1	MSMEG_4840	MSMEG_4835	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.403
ABK69528.1	ABK75786.1	MSMEG_4840	MSMEG_4839	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627.	0.817
ABK69528.1	ABK76040.1	MSMEG_4840	MSMEG_4844	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.925
ABK69528.1	ABK76233.1	MSMEG_4840	MSMEG_4842	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.	0.914
ABK70268.1	ABK69528.1	MSMEG_4845	MSMEG_4840	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Rieske [2Fe-2S] domain protein; Identified by match to protein family HMM PF00355.	0.924
ABK70268.1	ABK70760.1	MSMEG_4845	MSMEG_4843	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Conserved hypothetical protein.	0.896
ABK70268.1	ABK72622.1	MSMEG_4845	MSMEG_4841	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Conserved hypothetical protein.	0.896
ABK70268.1	ABK73240.1	MSMEG_4845	MSMEG_4837	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Amidohydrolase 2; Identified by match to protein family HMM PF04909.	0.660
ABK70268.1	ABK74019.1	MSMEG_4845	MSMEG_4836	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	FadE12_1; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.583
ABK70268.1	ABK74697.1	MSMEG_4845	MSMEG_4838	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Hypothetical protein; Identified by Glimmer2; putative.	0.548
ABK70268.1	ABK74702.1	MSMEG_4845	MSMEG_4835	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.	0.586
ABK70268.1	ABK75786.1	MSMEG_4845	MSMEG_4839	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Carboxymuconolactone decarboxylase; Identified by match to protein family HMM PF02627.	0.797
ABK70268.1	ABK76040.1	MSMEG_4845	MSMEG_4844	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.966
ABK70268.1	ABK76233.1	MSMEG_4845	MSMEG_4842	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Amidohydrolase; Identified by match to protein family HMM PF01979; match to protein family HMM PF07969.	0.906