Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK76020.1Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106. (266 aa)    
Predicted Functional Partners:
ABK70103.1
Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.
  
 0.972
ABK73766.1
3-oxoacyl-ACP synthase III.
  
 
 0.947
fabD
Malonyl CoA-acyl carrier protein transacylase; Belongs to the FabD family.
  
 0.896
ABK71596.1
Conserved hypothetical protein.
  
 
 0.889
ABK69716.1
Conserved hypothetical protein.
  
 
 0.887
ABK70764.1
Identified by match to protein family HMM PF00557.
 
 
 
 0.875
ABK69795.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
  
  
 
0.872
ABK71564.1
Identified by match to protein family HMM PF04909.
 
 
 0.870
ABK74376.1
enoyl-CoA hydratase, putative; Identified by match to protein family HMM PF00378.
 
 0.861
ABK74702.1
3-oxoacyl-[acyl-carrier-protein] reductase; Identified by match to protein family HMM PF00106.
  
  
 
0.854
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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