Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71564.1Identified by match to protein family HMM PF04909. (390 aa)    
Predicted Functional Partners:
ABK70764.1
Identified by match to protein family HMM PF00557.
 
    0.952
ABK72042.1
Identified by match to protein family HMM PF00557.
 
    0.948
ABK75693.1
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
 
    0.933
ABK74376.1
enoyl-CoA hydratase, putative; Identified by match to protein family HMM PF00378.
 
    0.932
ABK76020.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.
 
 
 0.870
ABK70326.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
 
     0.834
ABK74776.1
3-alpha-hydroxysteroid dehydrogenase.
 
 
 0.824
ABK74023.1
Virulence factor Mce family protein; Identified by match to protein family HMM PF02470; match to protein family HMM TIGR00996.
      
 0.824
ABK72161.1
Conserved domain protein.
 
    0.822
ABK74694.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
    0.821
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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