Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72161.1Conserved domain protein. (64 aa)    
Predicted Functional Partners:
ABK74694.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
 
    0.926
ABK72320.1
Cytochrome P450; Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
  
 0.842
ABK71564.1
Identified by match to protein family HMM PF04909.
 
    0.822
ABK70764.1
Identified by match to protein family HMM PF00557.
 
     0.767
ABK72042.1
Identified by match to protein family HMM PF00557.
  
    0.740
ABK74376.1
enoyl-CoA hydratase, putative; Identified by match to protein family HMM PF00378.
       0.734
ABK75693.1
Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
       0.709
ABK72049.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106.
    
  0.699
ABK76020.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106.
  
 
  0.679
ABK74776.1
3-alpha-hydroxysteroid dehydrogenase.
 
 
  0.653
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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