Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABK74641.1Transcriptional regulator, IclR family protein, C- domain protein; Identified by match to protein family HMM PF01614. (241 aa)    
Predicted Functional Partners:
ABK76161.1
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.812
ABK73927.1
FAD binding domain, putative; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266.
  
  
 0.765
ABK74549.1
2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; Identified by match to protein family HMM PF00561.
  
 
 0.747
ABK70837.1
3-ketosteroid dehydrogenase; Identified by match to protein family HMM PF00890.
  
  
 0.724
ABK71104.1
Urea amidolyase; Identified by match to protein family HMM PF02626; match to protein family HMM PF02682; match to protein family HMM TIGR00724.
  
  
 0.719
ABK73999.1
Cyclase; Identified by match to protein family HMM PF04199.
 
    0.713
ABK74815.1
Transcriptional regulator, IclR family protein; Identified by match to protein family HMM PF01614.
  
     0.709
ABK72682.1
Acetate operon repressor; Identified by match to protein family HMM PF01614.
  
     0.709
ABK74990.1
Transcriptional regulator, IclR family protein, putative; Identified by match to protein family HMM PF01614.
  
     0.705
ABK70326.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
  
    0.705
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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