Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74517.1Major facilitator family protein transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (433 aa)    
Predicted Functional Partners:
ABK72357.1
Conserved hypothetical protein.
       0.757
ABK70653.1
AMP-dependent synthetase and ligase; Identified by match to protein family HMM PF00501.
    
 0.713
ABK72896.1
Short chain dehydrogenase; Identified by match to protein family HMM PF00106.
     
 0.704
saeC
Conserved hypothetical protein; May be involved in assembly of the ESX-1 / type VII specialized secretion system (T7SS), which exports several proteins including EsxA and EsxB. Involved in DNA conjugation in recipient (MKD8) strain.
    
 0.435
ABK76209.1
methylmalonyl-CoA mutase, N-terminus of large subunit; Identified by match to protein family HMM PF01642; match to protein family HMM TIGR00641.
  
    0.429
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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