Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72558.1Pks14 protein. (114 aa)    
Predicted Functional Partners:
ABK72397.1
Conserved hypothetical protein.
 
    0.878
ABK71271.1
Copper resistance protein CopC; Identified by match to protein family HMM PF04234.
  
    0.722
ABK70599.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02591.
 
     0.645
ABK70382.1
Conserved hypothetical protein.
  
     0.610
ABK74818.1
Conserved hypothetical protein.
  
     0.598
ABK74527.1
Conserved hypothetical protein; Belongs to the UPF0336 family.
  
     0.583
ABK74653.1
Integral membrane protein; Identified by match to protein family HMM PF06271.
 
     0.577
ABK69679.1
Probable cytochrome c oxidase polypeptide 4; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
     0.569
ABK74802.1
Methionine synthase, vitamin-B12 independent; Identified by match to protein family HMM PF01717.
  
 
 0.549
ABK75074.1
Ubiquinol-cytochrome c reductase cytochrome c subunit; Identified by match to protein family HMM PF00034.
 
   
 0.546
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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