Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK74593.1Conserved hypothetical protein. (99 aa)    
Predicted Functional Partners:
nucS
Conserved hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
 
  
 0.921
ABK70640.1
Conserved hypothetical protein.
     
 0.663
ABK70918.1
Transcriptional regulator, Ada family protein/DNA-3-methyladenine glycosylase II; Identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029.
  
    0.657
ABK76136.1
Adenylate cyclase, family protein 3; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.
  
  
 0.608
ABK70575.1
Conserved hypothetical protein.
  
  
 0.553
ABK74160.1
Conserved hypothetical protein.
  
    0.532
ABK71584.1
Geranylgeranyl reductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032.
  
    0.520
ABK69691.1
Geranylgeranyl reductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02032.
  
    0.520
ABK73338.1
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.509
ABK74419.1
Conserved hypothetical protein.
  
 
 0.478
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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