Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71919.1IS1096, tnpA protein; Identified by similarity to GP:150005; match to protein family HMM PF01610. (440 aa)    
Predicted Functional Partners:
ABK75183.1
Tena/thi-4 family protein; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway; Belongs to the TenA family.
      
 0.822
ABK71044.1
IS1096, tnpR protein; Identified by similarity to GP:150004; match to protein family HMM PF07929.
      
 0.821
ABK71378.1
IS1096, tnpR protein; Identified by similarity to GP:150004; match to protein family HMM PF07929.
      
 0.623
ABK70918.1
Transcriptional regulator, Ada family protein/DNA-3-methyladenine glycosylase II; Identified by match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029.
       0.486
ABK76136.1
Adenylate cyclase, family protein 3; Identified by match to protein family HMM PF00211; match to protein family HMM PF00672.
       0.436
ABK72288.1
Ferric cations import ATP-binding protein FbpC; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
      
 0.421
ABK74012.1
Fe uptake system integral membrane protein; Identified by match to protein family HMM PF01032; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
      
 0.421
ABK71698.1
Conserved hypothetical protein.
      
 0.421
ABK72305.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
      
 0.420
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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