STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71935.1CalU12 protein; Identified by match to protein family HMM PF05988. (226 aa)    
Predicted Functional Partners:
ABK72062.1
Conserved hypothetical protein; Identified by match to protein family HMM PF00296.
       0.773
ABK69580.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.625
ABK70338.1
RNA polymerase ECF-subfamily protein sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
    0.529
ABK71043.1
Two-component system sensor kinase; Identified by match to protein family HMM PF02518; match to protein family HMM PF07730.
       0.514
ABK70063.1
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.
       0.514
ecf
Extra cytoplasmic sigma factor; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family.
 
    0.490
ABK72584.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.483
ABK74272.1
3-demethylubiquinone-9 3-methyltransferase; Identified by match to protein family HMM PF06983.
 
    0.452
ABK74796.1
Cupin 2, conserved barrel; Identified by match to protein family HMM PF07883.
 
     0.431
ABK75543.1
RemO protein; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494.
       0.427
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.