ABK73938.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73938.1

Isochorismatase hydrolase; Identified by match to protein family HMM PF00857. (198 aa)

Predicted Functional Partners:

thiC

0.840

phd

0.824

ABK72980.1

0.810

ABK71422.1

0.683

ABK70576.1

0.672

cysD

0.667

cysNC

0.660

ABK73225.1

0.650

ABK69697.1

0.587

ABK74752.1

0.543

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69697.1	ABK70576.1	MSMEG_1925	MSMEG_4379	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	0.587
ABK69697.1	ABK73938.1	MSMEG_1925	MSMEG_4976	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	0.587
ABK70576.1	ABK69697.1	MSMEG_4379	MSMEG_1925	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	Isochorismate synthase DhbC; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543.	0.587
ABK70576.1	ABK73938.1	MSMEG_4379	MSMEG_4976	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	0.672
ABK70576.1	ABK74752.1	MSMEG_4379	MSMEG_3708	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.	0.477
ABK70576.1	phd	MSMEG_4379	MSMEG_1277	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the bacteriostatic effect of cognate toxin Doc. In M.smegmatis 3 TA systems (VapB-VapC, MazE-MazF and Phd-Doc) may be involved in monitoring the nutritional supply and physiological state of the cell, linking catabolic with anabolic reactions.	0.824
ABK70576.1	thiC	MSMEG_4379	MSMEG_0826	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.	0.839
ABK71422.1	ABK72980.1	MSMEG_4974	MSMEG_4975	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Identified by match to protein family HMM PF01243.	0.647
ABK71422.1	ABK73225.1	MSMEG_4974	MSMEG_4977	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	3'(2'),5'-bisphosphate nucleotidase, putative; Identified by similarity to SP:P22255; match to protein family HMM PF00459.	0.748
ABK71422.1	ABK73938.1	MSMEG_4974	MSMEG_4976	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	0.683
ABK71422.1	cysD	MSMEG_4974	MSMEG_4979	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Sulfate adenylyltransferase, small subunit; Identified by similarity to SP:P21156; match to protein family HMM PF01507; match to protein family HMM TIGR02039.	0.798
ABK71422.1	cysNC	MSMEG_4974	MSMEG_4978	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	Sulfate adenylytransferase, large subunit/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.796
ABK72980.1	ABK71422.1	MSMEG_4975	MSMEG_4974	Identified by match to protein family HMM PF01243.	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	0.647
ABK72980.1	ABK73225.1	MSMEG_4975	MSMEG_4977	Identified by match to protein family HMM PF01243.	3'(2'),5'-bisphosphate nucleotidase, putative; Identified by similarity to SP:P22255; match to protein family HMM PF00459.	0.646
ABK72980.1	ABK73938.1	MSMEG_4975	MSMEG_4976	Identified by match to protein family HMM PF01243.	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	0.810
ABK72980.1	cysD	MSMEG_4975	MSMEG_4979	Identified by match to protein family HMM PF01243.	Sulfate adenylyltransferase, small subunit; Identified by similarity to SP:P21156; match to protein family HMM PF01507; match to protein family HMM TIGR02039.	0.637
ABK72980.1	cysNC	MSMEG_4975	MSMEG_4978	Identified by match to protein family HMM PF01243.	Sulfate adenylytransferase, large subunit/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.623
ABK73225.1	ABK71422.1	MSMEG_4977	MSMEG_4974	3'(2'),5'-bisphosphate nucleotidase, putative; Identified by similarity to SP:P22255; match to protein family HMM PF00459.	Rrf2 family protein (putative transcriptional regulator); Identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738.	0.748
ABK73225.1	ABK72980.1	MSMEG_4977	MSMEG_4975	3'(2'),5'-bisphosphate nucleotidase, putative; Identified by similarity to SP:P22255; match to protein family HMM PF00459.	Identified by match to protein family HMM PF01243.	0.646
ABK73225.1	ABK73938.1	MSMEG_4977	MSMEG_4976	3'(2'),5'-bisphosphate nucleotidase, putative; Identified by similarity to SP:P22255; match to protein family HMM PF00459.	Isochorismatase hydrolase; Identified by match to protein family HMM PF00857.	0.650