STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70161.1Conserved hypothetical protein. (877 aa)    
Predicted Functional Partners:
ABK75618.1
DNA repair exonuclease; Identified by match to protein family HMM PF00149.
 
 
 0.966
ABK72749.1
Conserved hypothetical protein.
  
     0.681
snm
Secretion protein Snm4; Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG; Belongs to the EccD/Snm4 family.
  
     0.660
ABK72954.1
Pe family protein.
  
     0.594
ABK69676.1
MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
  
     0.586
ABK70117.1
MmpL4 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
  
     0.582
eccB3
Conserved hypothetical protein; An ATPase (By similarity). Part of the ESX-3 specialized secretion system, which is required for siderophore-mediated iron acquisition and for the secretion of EsxH and EsxG.
  
     0.578
ABK73385.1
Conserved hypothetical protein.
  
     0.572
ABK69899.1
MmpL5 protein; Identified by match to protein family HMM PF03176; match to protein family HMM TIGR00833.
  
     0.571
ABK74255.1
Immunogenic protein MPT63.
  
     0.568
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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