Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK72888.1Conserved domain protein; Identified by match to protein family HMM PF00403. (68 aa)    
Predicted Functional Partners:
ABK71068.1
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
 
 0.982
sodC
Copper/zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 0.962
ABK70195.1
Secreted protein.
 
 
 
 0.942
cadA
Cadmium-translocating P-type ATPase; Involved in heavy metal homeostasis. Probably exports nickel and cobalt ions out of the cell; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.
  
 
 0.841
ABK70091.1
Cadmium transporting P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525.
  
 
 0.834
ABK71078.1
Transcriptional repressor, CopY family protein; Identified by match to protein family HMM PF03965.
  
  
 0.749
ABK74067.1
Lipoprotein; Identified by match to protein family HMM PF03713.
  
  
 0.735
ABK72906.1
Cobalt-zinc-cadmium resistance protein; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297.
  
  
 0.630
ABK69823.1
Conserved hypothetical protein; Identified by match to protein family HMM PF02583.
 
  
 0.602
ABK73510.1
Transcriptional regulator, PadR family protein; Identified by match to protein family HMM PF03551.
     
 0.571
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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