STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74336.1Probable acyltransferase; Identified by match to protein family HMM PF01757. (382 aa)    
Predicted Functional Partners:
deaD
ATP-dependent rna helicase, dead/deah box family protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
  
  
 0.864
ABK74162.1
Identified by match to protein family HMM PF04954; match to protein family HMM PF08021.
  
    0.766
ABK73328.1
ATPase.
  
    0.717
ABK76075.1
LprE protein.
       0.704
ABK73478.1
Putative acyltransferase domain protein; Identified by match to protein family HMM PF01757.
  
     0.596
ABK75558.1
Conserved hypothetical protein.
 
   
 0.581
ABK75153.1
Conserved hypothetical protein.
 
    0.571
ABK70936.1
Conserved hypothetical protein.
 
     0.567
ABK74007.1
Conserved hypothetical protein.
  
     0.546
ABK72954.1
Pe family protein.
  
     0.539
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.