ABK73348.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK73348.1

ABC transporter, permease protein SugA; Identified by match to protein family HMM PF00528. (305 aa)

Predicted Functional Partners:

ABK75230.1

0.999

ABK75996.1

0.999

ABK72480.1

0.998

ABK73313.1

0.940

ugpC

0.938

ABK73052.1

0.937

ABK75191.1

0.931

ABK75908.1

0.931

ABK71632.1

0.921

ABK71755.1

0.918

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK71632.1	ABK71755.1	MSMEG_0556	MSMEG_3111	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Identified by match to protein family HMM PF01547.	0.800
ABK71632.1	ABK72480.1	MSMEG_0556	MSMEG_5061	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	0.903
ABK71632.1	ABK73052.1	MSMEG_0556	MSMEG_0508	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Glycerol-phosphate porter; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	0.565
ABK71632.1	ABK73313.1	MSMEG_0556	MSMEG_5571	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.581
ABK71632.1	ABK73348.1	MSMEG_0556	MSMEG_5060	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein SugA; Identified by match to protein family HMM PF00528.	0.921
ABK71632.1	ABK75191.1	MSMEG_0556	MSMEG_0515	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	Probable sugar transporter sugar binding lipoprotein; Identified by match to protein family HMM PF01547.	0.895
ABK71632.1	ABK75230.1	MSMEG_0556	MSMEG_5058	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein SugC; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.765
ABK71632.1	ABK75908.1	MSMEG_0556	MSMEG_3108	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, ATPase subunit; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.556
ABK71632.1	ABK75996.1	MSMEG_0556	MSMEG_5059	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein SugB; Identified by match to protein family HMM PF00528.	0.890
ABK71632.1	ugpC	MSMEG_0556	MSMEG_0518	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	ABC transporter, nucleotide binding/ATPase protein, sn-Glycerol-3-phosphate; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.	0.667
ABK71755.1	ABK71632.1	MSMEG_3111	MSMEG_0556	Identified by match to protein family HMM PF01547.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.800
ABK71755.1	ABK73052.1	MSMEG_3111	MSMEG_0508	Identified by match to protein family HMM PF01547.	Glycerol-phosphate porter; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.	0.914
ABK71755.1	ABK73313.1	MSMEG_3111	MSMEG_5571	Identified by match to protein family HMM PF01547.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.925
ABK71755.1	ABK73348.1	MSMEG_3111	MSMEG_5060	Identified by match to protein family HMM PF01547.	ABC transporter, permease protein SugA; Identified by match to protein family HMM PF00528.	0.918
ABK71755.1	ABK75191.1	MSMEG_3111	MSMEG_0515	Identified by match to protein family HMM PF01547.	Probable sugar transporter sugar binding lipoprotein; Identified by match to protein family HMM PF01547.	0.737
ABK71755.1	ABK75230.1	MSMEG_3111	MSMEG_5058	Identified by match to protein family HMM PF01547.	ABC transporter, ATP-binding protein SugC; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.943
ABK71755.1	ABK75908.1	MSMEG_3111	MSMEG_3108	Identified by match to protein family HMM PF01547.	ABC transporter, ATPase subunit; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.924
ABK71755.1	ABK75996.1	MSMEG_3111	MSMEG_5059	Identified by match to protein family HMM PF01547.	ABC transporter, permease protein SugB; Identified by match to protein family HMM PF00528.	0.805
ABK71755.1	ugpC	MSMEG_3111	MSMEG_0518	Identified by match to protein family HMM PF01547.	ABC transporter, nucleotide binding/ATPase protein, sn-Glycerol-3-phosphate; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.	0.780
ABK72480.1	ABK71632.1	MSMEG_5061	MSMEG_0556	Bacterial extracellular solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, nucleotide binding/ATPase protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.903