ABK74531.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK74531.1

Conserved hypothetical protein. (205 aa)

Predicted Functional Partners:

ABK70719.1

0.743

ABK75304.1

0.706

ABK73399.1

0.698

iscS

0.697

ABK74642.1

0.697

ABK76237.1

0.691

ABK73018.1

0.548

ABK70516.1

0.498

ABK69803.1

0.479

ABK72538.1

0.455

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK69803.1	ABK72538.1	MSMEG_4272	MSMEG_2268	Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.	Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.	0.752
ABK69803.1	ABK73018.1	MSMEG_4272	MSMEG_3126	Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.	SUF system FeS assembly protein, NifU family protein; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.	0.914
ABK69803.1	ABK74531.1	MSMEG_4272	MSMEG_5079	Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.	Conserved hypothetical protein.	0.479
ABK69803.1	ABK74642.1	MSMEG_4272	MSMEG_2357	Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.	Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	0.848
ABK69803.1	iscS	MSMEG_4272	MSMEG_1242	Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.	Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266.	0.916
ABK70516.1	ABK70719.1	MSMEG_5073	MSMEG_5077	Identified by match to protein family HMM PF01596; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.	Probable conserved integral membrane protein.	0.595
ABK70516.1	ABK73399.1	MSMEG_5073	MSMEG_5074	Identified by match to protein family HMM PF01596; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.	Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440.	0.761
ABK70516.1	ABK74531.1	MSMEG_5073	MSMEG_5079	Identified by match to protein family HMM PF01596; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.	Conserved hypothetical protein.	0.498
ABK70516.1	ABK75304.1	MSMEG_5073	MSMEG_5075	Identified by match to protein family HMM PF01596; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.608
ABK70516.1	ABK76237.1	MSMEG_5073	MSMEG_5076	Identified by match to protein family HMM PF01596; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.	ABC transporter membrane-spanning protein.	0.635
ABK70719.1	ABK70516.1	MSMEG_5077	MSMEG_5073	Probable conserved integral membrane protein.	Identified by match to protein family HMM PF01596; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-dependent O-methyltransferase family.	0.595
ABK70719.1	ABK73399.1	MSMEG_5077	MSMEG_5074	Probable conserved integral membrane protein.	Probable transcriptional regulatory protein; Identified by match to protein family HMM PF00440.	0.821
ABK70719.1	ABK74531.1	MSMEG_5077	MSMEG_5079	Probable conserved integral membrane protein.	Conserved hypothetical protein.	0.743
ABK70719.1	ABK75304.1	MSMEG_5077	MSMEG_5075	Probable conserved integral membrane protein.	ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005.	0.835
ABK70719.1	ABK76237.1	MSMEG_5077	MSMEG_5076	Probable conserved integral membrane protein.	ABC transporter membrane-spanning protein.	0.894
ABK72538.1	ABK69803.1	MSMEG_2268	MSMEG_4272	Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.	Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.	0.752
ABK72538.1	ABK73018.1	MSMEG_2268	MSMEG_3126	Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.	SUF system FeS assembly protein, NifU family protein; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.	0.712
ABK72538.1	ABK74531.1	MSMEG_2268	MSMEG_5079	Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.	Conserved hypothetical protein.	0.455
ABK72538.1	ABK74642.1	MSMEG_2268	MSMEG_2357	Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.	Cysteine desulfurase; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.	0.643
ABK72538.1	iscS	MSMEG_2268	MSMEG_1242	Conserved hypothetical protein; Identified by match to protein family HMM PF00355; match to protein family HMM PF01106.	Cysteine desulfurase IscS; Identified by match to protein family HMM PF00266.	0.643