ABK72287.1 protein (Mycolicibacterium smegmatis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ABK72287.1

Secreted protein. (221 aa)

Predicted Functional Partners:

ABK73713.1

0.815

ABK70593.1

0.768

ABK70103.1

0.677

ABK74611.1

0.653

ABK72895.1

0.652

ABK71854.1

0.587

pks

0.567

ABK72343.1

0.558

ABK72719.1

0.548

ABK75160.1

0.512

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70103.1	ABK70593.1	MSMEG_4757	MSMEG_5763	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Conserved hypothetical protein.	0.677
ABK70103.1	ABK71854.1	MSMEG_4757	MSMEG_5739	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.999
ABK70103.1	ABK72287.1	MSMEG_4757	MSMEG_5107	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Secreted protein.	0.677
ABK70103.1	ABK72343.1	MSMEG_4757	MSMEG_6838	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Putative esterase.	0.677
ABK70103.1	ABK72719.1	MSMEG_4757	MSMEG_6850	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Alpha/beta hydrolase.	0.677
ABK70103.1	ABK72895.1	MSMEG_4757	MSMEG_1797	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Salicylate esterase; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	pks	MSMEG_4757	MSMEG_0408	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.999
ABK70593.1	ABK70103.1	MSMEG_5763	MSMEG_4757	Conserved hypothetical protein.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.677
ABK70593.1	ABK71854.1	MSMEG_5763	MSMEG_5739	Conserved hypothetical protein.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.587
ABK70593.1	ABK72287.1	MSMEG_5763	MSMEG_5107	Conserved hypothetical protein.	Secreted protein.	0.768
ABK70593.1	ABK72343.1	MSMEG_5763	MSMEG_6838	Conserved hypothetical protein.	Putative esterase.	0.581
ABK70593.1	ABK72895.1	MSMEG_5763	MSMEG_1797	Conserved hypothetical protein.	Salicylate esterase; Identified by match to protein family HMM PF00561.	0.604
ABK70593.1	ABK73713.1	MSMEG_5763	MSMEG_5109	Conserved hypothetical protein.	Conserved hypothetical protein.	0.443
ABK70593.1	ABK74611.1	MSMEG_5763	MSMEG_3470	Conserved hypothetical protein.	NAD-dependent epimerase/dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993.	0.438
ABK70593.1	pks	MSMEG_5763	MSMEG_0408	Conserved hypothetical protein.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.567
ABK71854.1	ABK70103.1	MSMEG_5739	MSMEG_4757	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.999
ABK71854.1	ABK70593.1	MSMEG_5739	MSMEG_5763	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.587
ABK71854.1	ABK72287.1	MSMEG_5739	MSMEG_5107	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Secreted protein.	0.587
ABK71854.1	ABK72343.1	MSMEG_5739	MSMEG_6838	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Putative esterase.	0.587
ABK71854.1	ABK72719.1	MSMEG_5739	MSMEG_6850	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Alpha/beta hydrolase.	0.587