Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK71329.1Identified by match to protein family HMM PF00232. (475 aa)    
Predicted Functional Partners:
ABK74482.1
PTS system, glucose-specific IIBC component; Identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826.
 
 
 0.972
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02631; Belongs to the xylose isomerase family.
 
  
 0.958
ABK72872.1
Aldose 1-epimerase subfamily protein; Identified by match to protein family HMM PF01263.
  
 
 0.955
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.950
ABK74424.1
Identified by match to protein family HMM PF00128.
 
 
 0.936
ABK70781.1
Xylosidase/arabinosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.932
ABK75770.1
Identified by match to protein family HMM PF01341; Belongs to the glycosyl hydrolase family 6.
    
 0.889
ABK71277.1
Beta-glucoside-specific EII permease; Identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830.
 
 
 0.883
ABK69654.1
Glucokinase; Identified by match to protein family HMM PF00480.
  
 
 0.870
ABK73518.1
Polyphosphate glucokinase; Identified by match to protein family HMM PF00480.
  
 
 0.839
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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