Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABK70781.1Xylosidase/arabinosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family. (815 aa)    
Predicted Functional Partners:
ABK71329.1
Identified by match to protein family HMM PF00232.
 
  
 0.932
ABK70758.1
HTH-type transcriptional regulator DegA; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
 
 
 0.891
ABK75770.1
Identified by match to protein family HMM PF01341; Belongs to the glycosyl hydrolase family 6.
 
  
 0.801
ABK74579.1
Glyoxylate reductase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
  
 0.782
ABK74424.1
Identified by match to protein family HMM PF00128.
    
 0.781
ABK71418.1
Glyoxylate reductase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.779
ABK76154.1
Glyoxylate reductase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
      
 0.779
ABK69829.1
Identified by match to protein family HMM PF01547.
 
   
 0.779
ABK75431.1
Nitrate/nitrite transporter protein; Identified by match to protein family HMM PF07690.
     
 0.727
ABK70975.1
Alpha-galactosidase; Identified by match to protein family HMM PF02056.
 
  
 0.717
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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