STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK69829.1Identified by match to protein family HMM PF01547. (461 aa)    
Predicted Functional Partners:
ABK75276.1
Binding protein dependent transport protein; Identified by match to protein family HMM PF00528.
 
 0.985
ABK74573.1
Sugar ABC-transporter integral membrane protein; Identified by match to protein family HMM PF00528.
 
 
 0.974
ABK74801.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.852
ABK74128.1
Sugar transport system; Identified by match to protein family HMM PF00528.
 
 0.806
ABK73348.1
ABC transporter, permease protein SugA; Identified by match to protein family HMM PF00528.
  
 0.787
ABK73233.1
ABC transporter, permease protein UspA; Identified by match to protein family HMM PF00528.
 
 0.786
ABK70781.1
Xylosidase/arabinosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.779
ABK70186.1
Binding-protein-dependent transport systems inner membrane component; Identified by match to protein family HMM PF00528.
 
 0.766
ABK72462.1
ABC transporter permease protein, putative; Identified by match to protein family HMM PF00528.
 
 0.722
ABK71369.1
Sugar ABC transporter permease protein; Identified by match to protein family HMM PF00528.
 
 0.717
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.