Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABK71038.1O-methyltransferase, putative; Identified by match to protein family HMM PF02409. (278 aa)    
Predicted Functional Partners:
ABK72314.1
Conserved hypothetical protein; Identified by match to protein family HMM PF08002.
  
    0.816
ABK75616.1
Conserved hypothetical protein.
       0.656
ABK72943.1
Pyridoxamine 5'-phosphate oxidase family protein; Identified by match to protein family HMM PF01243.
       0.491
ABK75200.1
Conserved hypothetical protein.
  
     0.482
ABK74209.1
Conserved hypothetical protein.
       0.468
purD
Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family.
 
   
  0.466
ABK70943.1
Conserved hypothetical protein.
  
  
  0.413
ABK72388.1
Hypothetical ABC transporter ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00970; match to protein family HMM PF04954; match to protein family HMM PF08021.
 
     0.401
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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