ABK75940.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK75940.1

alpha-methylacyl-CoA racemase, putative; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family. (363 aa)

Predicted Functional Partners:

ABK71622.1

0.941

ABK70566.1

0.941

ABK73186.1

0.938

ABK74402.1

0.938

ABK74114.1

0.935

ABK75593.1

0.746

ABK75029.1

0.746

ABK70215.1

0.745

ABK75354.1

0.727

ABK74112.1

0.725

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70215.1	ABK75940.1	MSMEG_5183	MSMEG_5184	3-Hydroxyacyl-CoA dehydrogenase; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	alpha-methylacyl-CoA racemase, putative; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.745
ABK70566.1	ABK71622.1	MSMEG_5907	MSMEG_5906	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.999
ABK70566.1	ABK73186.1	MSMEG_5907	MSMEG_2231	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.949
ABK70566.1	ABK74112.1	MSMEG_5907	MSMEG_6511	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	acyl-CoA dehydrogenase domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770.	0.900
ABK70566.1	ABK74114.1	MSMEG_5907	MSMEG_5734	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.941
ABK70566.1	ABK74402.1	MSMEG_5907	MSMEG_5914	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.963
ABK70566.1	ABK75029.1	MSMEG_5907	MSMEG_3687	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Medium chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.	0.808
ABK70566.1	ABK75354.1	MSMEG_5907	MSMEG_4111	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.698
ABK70566.1	ABK75593.1	MSMEG_5907	MSMEG_2241	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	Medium chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.	0.808
ABK70566.1	ABK75940.1	MSMEG_5907	MSMEG_5184	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	alpha-methylacyl-CoA racemase, putative; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.941
ABK71622.1	ABK70566.1	MSMEG_5906	MSMEG_5907	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.999
ABK71622.1	ABK73186.1	MSMEG_5906	MSMEG_2231	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.955
ABK71622.1	ABK74114.1	MSMEG_5906	MSMEG_5734	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.941
ABK71622.1	ABK74402.1	MSMEG_5906	MSMEG_5914	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	acyl-CoA synthase; Identified by match to protein family HMM PF00501.	0.975
ABK71622.1	ABK75029.1	MSMEG_5906	MSMEG_3687	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Medium chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.	0.839
ABK71622.1	ABK75354.1	MSMEG_5906	MSMEG_4111	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.698
ABK71622.1	ABK75593.1	MSMEG_5906	MSMEG_2241	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Medium chain acyl-CoA synthetase; Identified by match to protein family HMM PF00501.	0.838
ABK71622.1	ABK75940.1	MSMEG_5906	MSMEG_5184	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	alpha-methylacyl-CoA racemase, putative; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.	0.941
ABK73186.1	ABK70566.1	MSMEG_2231	MSMEG_5907	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF08028.	0.949
ABK73186.1	ABK71622.1	MSMEG_2231	MSMEG_5906	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	Putative acyl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.955

page 1 of 4

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About