ABK74195.1 protein (Mycolicibacterium smegmatis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABK74195.1

Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561. (287 aa)

Predicted Functional Partners:

ABK75653.1

0.835

ABK70103.1

0.677

ABK75355.1

0.649

ABK76077.1

0.646

ABK71854.1

0.587

ABK75292.1

0.567

pks

0.567

ABK73452.1

0.524

ABK70179.1

0.512

pks5

0.495

Your Current Organism:

Mycolicibacterium smegmatis

NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABK70103.1	ABK70179.1	MSMEG_4757	MSMEG_4703	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	0.706
ABK70103.1	ABK71854.1	MSMEG_4757	MSMEG_5739	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.999
ABK70103.1	ABK73452.1	MSMEG_4757	MSMEG_5205	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Conserved hypothetical protein.	0.498
ABK70103.1	ABK74195.1	MSMEG_4757	MSMEG_5209	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.677
ABK70103.1	ABK75292.1	MSMEG_4757	MSMEG_0261	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	P40 protein.	0.853
ABK70103.1	pks	MSMEG_4757	MSMEG_0408	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.999
ABK70103.1	pks5	MSMEG_4757	MSMEG_4727	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.999
ABK70179.1	ABK70103.1	MSMEG_4703	MSMEG_4757	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.706
ABK70179.1	ABK71854.1	MSMEG_4703	MSMEG_5739	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	0.563
ABK70179.1	ABK73452.1	MSMEG_4703	MSMEG_5205	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	Conserved hypothetical protein.	0.517
ABK70179.1	ABK74195.1	MSMEG_4703	MSMEG_5209	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.512
ABK70179.1	ABK75292.1	MSMEG_4703	MSMEG_0261	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	P40 protein.	0.517
ABK70179.1	pks	MSMEG_4703	MSMEG_0408	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	Type I modular polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.587
ABK70179.1	pks5	MSMEG_4703	MSMEG_4727	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	Mycocerosic acid synthase; Polyketide synthase involved in the biosynthesis of 2,4- dimethyl-2-eicosenoic acid, a lipid component of the lipooligosaccharides (LOS) which are not located at the bacterial surface but rather in deeper compartments of the cell envelope of M.smegmatis.	0.449
ABK71854.1	ABK70103.1	MSMEG_5739	MSMEG_4757	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Fatty acid synthase; Identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF01575; match to protein family HMM PF02801.	0.999
ABK71854.1	ABK70179.1	MSMEG_5739	MSMEG_4703	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Glycerol-3-phosphate acyltransferase; Identified by match to protein family HMM PF01553; Belongs to the GPAT/DAPAT family.	0.563
ABK71854.1	ABK73452.1	MSMEG_5739	MSMEG_5205	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.644
ABK71854.1	ABK74195.1	MSMEG_5739	MSMEG_5209	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.	0.587
ABK71854.1	ABK75292.1	MSMEG_5739	MSMEG_0261	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	P40 protein.	0.540
ABK71854.1	ABK75355.1	MSMEG_5739	MSMEG_5208	Putative long-chain fatty-acid--CoA ligase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01746.	Conserved hypothetical protein.	0.643

page 1 of 5

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About