STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK74848.1Identified by match to protein family HMM PF00903. (135 aa)    
Predicted Functional Partners:
ABK75195.1
Hypothetical protein; Identified by Glimmer2; putative.
       0.603
ABK73101.1
Conserved hypothetical protein; Identified by match to protein family HMM PF07366.
    
  0.568
ABK75538.1
TetR family protein transcriptional regulator; Identified by match to protein family HMM PF00440.
  
     0.548
ABK70090.1
MarR-family protein transcriptional regulator; Identified by match to protein family HMM PF01047.
 
     0.523
ABK72055.1
Transcriptional regulator, TetR family protein; Identified by match to protein family HMM PF00440.
  
     0.493
ABK75158.1
Lyase; Identified by match to protein family HMM PF00903.
  
 
 0.437
ABK75141.1
Identified by match to protein family HMM PF00903.
  
 
 0.437
ABK71700.1
Identified by match to protein family HMM PF00903.
  
 
 0.437
ABK72129.1
Identified by match to protein family HMM PF00903.
  
 
 0.437
ABK75944.1
Quinone binding protein; Identified by match to protein family HMM PF00903.
  
 
 0.437
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.