Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70949.1Conserved hypothetical protein; Identified by match to protein family HMM PF01594. (395 aa)    
Predicted Functional Partners:
ABK72478.1
Short-chain dehydrogenase/reductase SDR; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370.
       0.728
ABK70486.1
RmlD substrate binding domain superfamily protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993.
     
 0.620
ABK70539.1
Conserved hypothetical protein.
 
     0.607
ABK72867.1
Conserved hypothetical proline rich protein.
 
     0.603
ABK74439.1
Conserved hypothetical protein.
  
     0.602
ABK71946.1
Conserved hypothetical proline and threonine rich protein.
 
    0.599
ABK73217.1
Conserved hypothetical protein.
 
     0.599
ABK71682.1
Short chain dehydrogenase family protein; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.598
ABK74255.1
Immunogenic protein MPT63.
  
     0.554
ABK75774.1
Conserved hypothetical proline rich protein.
 
     0.550
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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