Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABK70610.1GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730. (571 aa)    
Predicted Functional Partners:
ABK74349.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.987
ABK70689.1
Two component transcriptional regulatory protein devr; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.979
ABK73924.1
GAF family protein; Identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730.
 
 
0.939
ABK75795.1
Two-component system sensor kinase; Identified by match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229.
 
0.932
ABK70647.1
DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.922
ABK70063.1
Two-component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545.
 
 0.893
ABK75395.1
Conserved hypothetical protein.
 
  
 0.891
ABK75951.1
Two-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.875
ABK74061.1
DNA-binding response regulator, LuxR family protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 0.841
ABK69658.1
Two-component sensor protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF05227.
    
 0.840
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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