STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK70496.1Chloride channel; Identified by match to protein family HMM PF00654. (458 aa)    
Predicted Functional Partners:
ABK72128.1
Conserved hypothetical protein; Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
  
    0.688
ABK70000.1
Aquaporin Z; Identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.646
ABK70442.1
PTS system, Fru family protein, IIABC components; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
  
 0.578
ABK75920.1
Glutamate decarboxylase; Identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; Belongs to the group II decarboxylase family.
 
  
 0.508
ABK70452.1
SNF2 domain protein; Identified by match to protein family HMM PF00176.
  
 0.497
ABK71634.1
Identified by match to protein family HMM PF00899.
 
 
 0.490
ABK69762.1
Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
  
    0.459
ABK75657.1
Amino acid carrier protein; Identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835.
  
    0.459
ABK75076.1
Amidase; Identified by match to protein family HMM PF03069.
 
    0.457
ABK73088.1
Identified by match to protein family HMM PF01161.
 
 
 0.442
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.