Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABK70031.1 | ABK73290.1 | MSMEG_5036 | MSMEG_6469 | Identified by match to protein family HMM PF01694. | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | 0.452 |
ABK71996.1 | ABK73290.1 | MSMEG_6470 | MSMEG_6469 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | 0.497 |
ABK73290.1 | ABK70031.1 | MSMEG_6469 | MSMEG_5036 | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | Identified by match to protein family HMM PF01694. | 0.452 |
ABK73290.1 | ABK71996.1 | MSMEG_6469 | MSMEG_6470 | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | Hypothetical protein; Identified by Glimmer2; putative. | 0.497 |
ABK73290.1 | ABK73914.1 | MSMEG_6469 | MSMEG_6468 | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | Conserved hypothetical protein. | 0.633 |
ABK73290.1 | dehII-2 | MSMEG_6469 | MSMEG_3450 | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | Haloacid dehalogenase, type II; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493. | 0.414 |
ABK73290.1 | dps | MSMEG_6469 | MSMEG_6467 | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | Starvation-induced DNA protecting protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It protects DNA from hydroxyl radical-mediated cleavage. Binds DNA with no apparent sequence specificity without self- aggregation nor promotion of DNA condensation. Is unable to protect DNA from DNase-mediated cleavage (By similarity). | 0.494 |
ABK73290.1 | egtD | MSMEG_6469 | MSMEG_6247 | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | Conserved hypothetical protein; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine. Among all the proteinogenic amino acids, only L-histidine is a substrate. | 0.489 |
ABK73914.1 | ABK73290.1 | MSMEG_6468 | MSMEG_6469 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | 0.633 |
ABK73914.1 | dps | MSMEG_6468 | MSMEG_6467 | Conserved hypothetical protein. | Starvation-induced DNA protecting protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It protects DNA from hydroxyl radical-mediated cleavage. Binds DNA with no apparent sequence specificity without self- aggregation nor promotion of DNA condensation. Is unable to protect DNA from DNase-mediated cleavage (By similarity). | 0.737 |
dehII-2 | ABK73290.1 | MSMEG_3450 | MSMEG_6469 | Haloacid dehalogenase, type II; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493. | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | 0.414 |
dps | ABK73290.1 | MSMEG_6467 | MSMEG_6469 | Starvation-induced DNA protecting protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It protects DNA from hydroxyl radical-mediated cleavage. Binds DNA with no apparent sequence specificity without self- aggregation nor promotion of DNA condensation. Is unable to protect DNA from DNase-mediated cleavage (By similarity). | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | 0.494 |
dps | ABK73914.1 | MSMEG_6467 | MSMEG_6468 | Starvation-induced DNA protecting protein; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction (By similarity). It protects DNA from hydroxyl radical-mediated cleavage. Binds DNA with no apparent sequence specificity without self- aggregation nor promotion of DNA condensation. Is unable to protect DNA from DNase-mediated cleavage (By similarity). | Conserved hypothetical protein. | 0.737 |
egtD | ABK73290.1 | MSMEG_6247 | MSMEG_6469 | Conserved hypothetical protein; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine. Among all the proteinogenic amino acids, only L-histidine is a substrate. | Conserved hypothetical protein; Identified by match to protein family HMM PF04248. | 0.489 |