STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK71498.1Creatinine amidohydrolase; Identified by match to protein family HMM PF02633. (274 aa)    
Predicted Functional Partners:
ABK70622.1
Creatininase subfamily protein; Identified by match to protein family HMM PF02633.
  
 
 
0.928
ABK70439.1
Cytosine deaminase; Identified by match to protein family HMM PF00383.
    
  0.901
ABK73327.1
Isomerase; Identified by match to protein family HMM PF01188; match to protein family HMM PF02746; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
    0.863
ABK72099.1
Probable membrane sugar transferase; Identified by match to protein family HMM PF00535.
 
  
 0.848
ABK71611.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
    0.809
ABK75692.1
Identified by match to protein family HMM PF00480.
 
    0.671
ABK73646.1
Conserved hypothetical protein.
 
  
 0.662
ABK73068.1
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
  
 0.523
ABK71469.1
Chitin synthase; Identified by match to protein family HMM PF00535; match to protein family HMM PF03142.
  
  
 0.498
ABK72411.1
Conserved hypothetical protein.
  
  
 0.498
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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