STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK75817.1Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family. (297 aa)    
Predicted Functional Partners:
ABK74439.1
Conserved hypothetical protein.
  
  
 0.975
ABK70175.1
Integral membrane protein MviN, putative; Identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695.
  
    0.866
ABK73691.1
tRNA adenylyltransferase; Identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR02692; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.667
rnj
Metallo-beta-lactamase superfamily protein; An RNase that has endonuclease and 5'-3' exonuclease activity. The 5'-exonuclease activity acts on 5'-monophosphate but not 5'-triphosphate ends. Endonuclease activity can cleave within 4 nucleotides of the 5'-end of a triphosphorylated RNA. Plays the major role in pre-23S rRNA maturation, and a minor role in processing of pre- 5S and pre-16S rRNA.
 
  
 0.616
ABK72725.1
Conserved hypothetical protein.
 
  
 0.615
ABK71520.1
Conserved hypothetical protein.
  
  
 0.594
ABK73599.1
CTP pyrophosphohydrolase; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
   
  
 0.593
ABK73385.1
Conserved hypothetical protein.
  
  
 0.590
ABK71674.1
RNA polymerase sigma-70 factor; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.560
ABK76097.1
Putative DNA repair polymerase.
  
  
 0.509
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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