Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK70887.1 | ABK72015.1 | MSMEG_4701 | MSMEG_6153 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | 0.780 |
| ABK70887.1 | ABK72022.1 | MSMEG_4701 | MSMEG_3178 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.762 |
| ABK70887.1 | ABK75351.1 | MSMEG_4701 | MSMEG_6892 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.836 |
| ABK70887.1 | dnaN | MSMEG_4701 | MSMEG_0001 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.664 |
| ABK70887.1 | dnaX | MSMEG_4701 | MSMEG_6285 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.879 |
| ABK70887.1 | priA | MSMEG_4701 | MSMEG_3061 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.754 |
| ABK70887.1 | rplI | MSMEG_4701 | MSMEG_6894 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.577 |
| ABK70887.1 | rpsF | MSMEG_4701 | MSMEG_6897 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.751 |
| ABK70887.1 | ssb | MSMEG_4701 | MSMEG_6896 | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.921 |
| ABK72015.1 | ABK70887.1 | MSMEG_6153 | MSMEG_4701 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.780 |
| ABK72015.1 | ABK72022.1 | MSMEG_6153 | MSMEG_3178 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | 0.981 |
| ABK72015.1 | ABK75351.1 | MSMEG_6153 | MSMEG_6892 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.657 |
| ABK72015.1 | dnaN | MSMEG_6153 | MSMEG_0001 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
| ABK72015.1 | dnaX | MSMEG_6153 | MSMEG_6285 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | DNA polymerase III gamma/tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.923 |
| ABK72015.1 | priA | MSMEG_6153 | MSMEG_3061 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.517 |
| ABK72015.1 | ssb | MSMEG_6153 | MSMEG_6896 | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | Single-stranded DNA-binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.814 |
| ABK72022.1 | ABK70887.1 | MSMEG_3178 | MSMEG_4701 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | Single-strand binding protein; Identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621. | 0.762 |
| ABK72022.1 | ABK72015.1 | MSMEG_3178 | MSMEG_6153 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III subunit delta; Identified by match to protein family HMM TIGR00678. | 0.981 |
| ABK72022.1 | ABK75351.1 | MSMEG_3178 | MSMEG_6892 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.710 |
| ABK72022.1 | dnaN | MSMEG_3178 | MSMEG_0001 | DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.998 |
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