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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0035ABC transporter, substrate-binding protein, aliphatic sulfonates family; Identified by match to protein family HMM PF03180; match to protein family HMM TIGR01728. (336 aa)    
Predicted Functional Partners:
MXAN_0036
Putative aliphatic sulfonates ABC transporter, permease protein; Identified by similarity to PIR:B96913; match to protein family HMM PF00528.
  
 0.971
MXAN_0037
Putative aliphatic sulfonates ABC transporter, ATP-binding protein; Identified by similarity to GB:BAD39859.1; match to protein family HMM PF00005.
 
  
 0.951
MXAN_2833
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.748
MXAN_2832
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
  
 0.734
MXAN_5894
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
      
 0.645
MXAN_7143
Sigma-54 dependent DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
      
 0.640
natA
Sodium ABC tranporter ATP-binding protein NatA; Identified by similarity to SP:P46903; match to protein family HMM PF00005.
      
 0.634
MXAN_0502
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037.
      
 0.633
MXAN_3717
Putative ABC transporter, permease protein; Identified by similarity to GB:CAE10972.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
      
 0.633
MXAN_7146
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
      
 0.633
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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