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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0128Putative lipoprotein. (679 aa)    
Predicted Functional Partners:
MXAN_4405
Peptide synthetase; Identified by match to protein family HMM PF00501.
    
 
 0.810
MXAN_0396
Putative serine/threonine protein kinase; Identified by similarity to SP:P54738; match to protein family HMM PF00069.
      
 0.806
MXAN_0533
NAD dependent epimerase/dehydratase family; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01409.
      
 0.806
MXAN_1277
Putative lipoprotein.
      
 0.806
MXAN_1046
FG-GAP repeat/HVR domain protein; Identified by match to protein family HMM PF01839; match to protein family HMM PF02494.
  
     0.630
MXAN_1003
Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409.
  
     0.611
MXAN_5445
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.593
MXAN_0129
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.573
MXAN_0130
Putative lipoprotein.
 
    
0.560
MXAN_5625
Putative membrane protein.
  
    0.551
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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