MXAN_0222 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0222

Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107. (345 aa)

Predicted Functional Partners:

MXAN_4292

0.934

MXAN_4300

0.934

MXAN_4297

0.927

MXAN_4529

0.927

MXAN_4298

0.922

MXAN_3620

0.918

MXAN_3631

0.918

MXAN_3621

0.917

MXAN_3630

0.917

MXAN_4301

0.917

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_0222	MXAN_3620	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.918
MXAN_0222	MXAN_3621	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.917
MXAN_0222	MXAN_3630	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.917
MXAN_0222	MXAN_3631	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.918
MXAN_0222	MXAN_4292	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase; Identified by similarity to GB:AAF26921.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01073; match to protein family HMM PF02801; match to protein family HMM PF07993.	0.934
MXAN_0222	MXAN_4297	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase; Identified by similarity to GB:AAF26923.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.927
MXAN_0222	MXAN_4298	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.922
MXAN_0222	MXAN_4300	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.934
MXAN_0222	MXAN_4301	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.	0.917
MXAN_0222	MXAN_4529	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	Polyketide synthase type I; Identified by similarity to GB:AAK57189.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.927
MXAN_3620	MXAN_0222	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.918
MXAN_3620	MXAN_3621	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.793
MXAN_3620	MXAN_4292	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase; Identified by similarity to GB:AAF26921.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01073; match to protein family HMM PF02801; match to protein family HMM PF07993.	0.573
MXAN_3620	MXAN_4297	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase; Identified by similarity to GB:AAF26923.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.482
MXAN_3620	MXAN_4300	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.597
MXAN_3620	MXAN_4529	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase type I; Identified by similarity to GB:AAK57189.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.477
MXAN_3621	MXAN_0222	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.917
MXAN_3621	MXAN_3620	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	0.793
MXAN_3621	MXAN_4300	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Polyketide synthase type I; Identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF01370; match to protein family HMM PF02801.	0.405
MXAN_3630	MXAN_0222	Polyketide synthase type I; Identified by similarity to GB:BAB74345.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801.	Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107.	0.917