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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0233RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (182 aa)    
Predicted Functional Partners:
MXAN_0823
ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656.
 
   0.796
MXAN_7216
ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656.
  
    0.696
MXAN_0455
Conserved domain protein; Identified by similarity to GB:AAO76334.1.
  
   0.645
difB
DifB protein; Identified by similarity to GB:AAC27629.1.
  
     0.545
MXAN_6997
tonB domain protein; Identified by match to protein family HMM PF07715; match to protein family HMM TIGR01352.
  
  
 0.522
MXAN_0821
Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
  
  
 0.494
MXAN_0569
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.473
MXAN_4867
FHA domain/TonB domain protein; Identified by match to protein family HMM PF00498; match to protein family HMM TIGR01352.
  
    0.468
MXAN_0229
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
       0.466
MXAN_0230
Putative sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF02518.
       0.466
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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