STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0238Hypothetical protein; Identified by Glimmer2; putative. (424 aa)    
Predicted Functional Partners:
MXAN_0239
Conserved hypothetical protein; Identified by similarity to PIR:G75575.
       0.773
MXAN_0241
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.664
MXAN_5528
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.602
MXAN_3168
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.506
MXAN_0812
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.505
MXAN_2297
Conserved hypothetical protein; Identified by similarity to PIR:AH2368.
  
     0.491
MXAN_1365
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.482
MXAN_6749
Bacterial Ig-like domain protein; Identified by match to protein family HMM PF02368.
  
     0.454
MXAN_5353
Putative 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; Identified by similarity to GB:CAA75080.1.
  
     0.443
MXAN_1405
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.439
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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