MXAN_0261 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0261

Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381. (272 aa)

Predicted Functional Partners:

MXAN_1066

0.900

MXAN_0260

0.880

MXAN_6878

0.724

MXAN_7288

0.722

MXAN_4050

0.695

MXAN_7140

0.692

pfkB

0.681

MXAN_2849

0.666

MXAN_6564

0.659

MXAN_2473

0.623

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0260	MXAN_0261	MXAN_0260	MXAN_0261	Putative cation transporter/universal stress family protein; Identified by similarity to GB:AAM80527.1; match to protein family HMM PF00582; match to protein family HMM PF00999.	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	0.880
MXAN_0261	MXAN_0260	MXAN_0261	MXAN_0260	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Putative cation transporter/universal stress family protein; Identified by similarity to GB:AAM80527.1; match to protein family HMM PF00582; match to protein family HMM PF00999.	0.880
MXAN_0261	MXAN_1066	MXAN_0261	MXAN_1066	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	PTS system, IIA component; Identified by match to protein family HMM PF00359.	0.900
MXAN_0261	MXAN_2473	MXAN_0261	MXAN_2473	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Identified by match to protein family HMM PF00719.	0.623
MXAN_0261	MXAN_2849	MXAN_0261	MXAN_2849	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Hypothetical protein; Identified by Glimmer2; putative.	0.666
MXAN_0261	MXAN_4050	MXAN_0261	MXAN_4050	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Hypothetical protein; Identified by Glimmer2; putative.	0.695
MXAN_0261	MXAN_6564	MXAN_0261	MXAN_6564	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Conserved hypothetical protein; Displays ATPase and GTPase activities.	0.659
MXAN_0261	MXAN_6878	MXAN_0261	MXAN_6878	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Putative dihydroneopterin aldolase; Identified by similarity to SP:P31055; match to protein family HMM PF02152; match to protein family HMM TIGR00526.	0.724
MXAN_0261	MXAN_7140	MXAN_0261	MXAN_7140	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Glycosyl hydrolase, family 15.	0.692
MXAN_0261	MXAN_7288	MXAN_0261	MXAN_7288	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	Conserved hypothetical protein.	0.722
MXAN_0261	pfkB	MXAN_0261	MXAN_2372	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	6-phosphofructokinase; Identified by similarity to SP:P06999; match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.	0.681
MXAN_1066	MXAN_0261	MXAN_1066	MXAN_0261	PTS system, IIA component; Identified by match to protein family HMM PF00359.	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	0.900
MXAN_1066	MXAN_6564	MXAN_1066	MXAN_6564	PTS system, IIA component; Identified by match to protein family HMM PF00359.	Conserved hypothetical protein; Displays ATPase and GTPase activities.	0.747
MXAN_1066	pfkB	MXAN_1066	MXAN_2372	PTS system, IIA component; Identified by match to protein family HMM PF00359.	6-phosphofructokinase; Identified by similarity to SP:P06999; match to protein family HMM PF00294; Belongs to the carbohydrate kinase PfkB family.	0.790
MXAN_2473	MXAN_0261	MXAN_2473	MXAN_0261	Identified by match to protein family HMM PF00719.	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	0.623
MXAN_2473	MXAN_6878	MXAN_2473	MXAN_6878	Identified by match to protein family HMM PF00719.	Putative dihydroneopterin aldolase; Identified by similarity to SP:P31055; match to protein family HMM PF02152; match to protein family HMM TIGR00526.	0.498
MXAN_2473	MXAN_7140	MXAN_2473	MXAN_7140	Identified by match to protein family HMM PF00719.	Glycosyl hydrolase, family 15.	0.704
MXAN_2473	MXAN_7288	MXAN_2473	MXAN_7288	Identified by match to protein family HMM PF00719.	Conserved hypothetical protein.	0.756
MXAN_2849	MXAN_0261	MXAN_2849	MXAN_0261	Hypothetical protein; Identified by Glimmer2; putative.	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	0.666
MXAN_4050	MXAN_0261	MXAN_4050	MXAN_0261	Hypothetical protein; Identified by Glimmer2; putative.	Putative transcriptional regulator; Identified by match to protein family HMM PF00359; match to protein family HMM PF01381.	0.695