rimJ protein (Myxococcus xanthus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

rimJ

Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583. (196 aa)

Predicted Functional Partners:

MXAN_5374

0.739

MXAN_1390

0.737

MXAN_3661

0.731

MXAN_0333

0.705

MXAN_3215

0.669

MXAN_0334

0.629

rnc

0.571

MXAN_5306

0.566

MXAN_4010

0.474

MXAN_0335

0.464

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0333	MXAN_0334	MXAN_0333	MXAN_0334	Identified by match to protein family HMM PF00691.	Conserved domain protein; Identified by similarity to PIR:H75376.	0.730
MXAN_0333	MXAN_0335	MXAN_0333	MXAN_0335	Identified by match to protein family HMM PF00691.	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	0.503
MXAN_0333	rimJ	MXAN_0333	MXAN_0332	Identified by match to protein family HMM PF00691.	Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583.	0.705
MXAN_0334	MXAN_0333	MXAN_0334	MXAN_0333	Conserved domain protein; Identified by similarity to PIR:H75376.	Identified by match to protein family HMM PF00691.	0.730
MXAN_0334	MXAN_0335	MXAN_0334	MXAN_0335	Conserved domain protein; Identified by similarity to PIR:H75376.	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	0.562
MXAN_0334	rimJ	MXAN_0334	MXAN_0332	Conserved domain protein; Identified by similarity to PIR:H75376.	Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583.	0.629
MXAN_0335	MXAN_0333	MXAN_0335	MXAN_0333	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	Identified by match to protein family HMM PF00691.	0.503
MXAN_0335	MXAN_0334	MXAN_0335	MXAN_0334	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	Conserved domain protein; Identified by similarity to PIR:H75376.	0.562
MXAN_0335	rimJ	MXAN_0335	MXAN_0332	Identified by match to protein family HMM PF01367; match to protein family HMM PF02739.	Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583.	0.464
MXAN_1390	MXAN_3661	MXAN_1390	MXAN_3661	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.650
MXAN_1390	MXAN_5306	MXAN_1390	MXAN_5306	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.483
MXAN_1390	rimJ	MXAN_1390	MXAN_0332	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583.	0.737
MXAN_1390	rnc	MXAN_1390	MXAN_3762	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.517
MXAN_3215	rimJ	MXAN_3215	MXAN_0332	ActC; Identified by similarity to GB:AAK38651.1; match to protein family HMM PF00583; match to protein family HMM PF01073; match to protein family HMM PF01370.	Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583.	0.669
MXAN_3661	MXAN_1390	MXAN_3661	MXAN_1390	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.650
MXAN_3661	MXAN_4010	MXAN_3661	MXAN_4010	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.647
MXAN_3661	MXAN_5306	MXAN_3661	MXAN_5306	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.657
MXAN_3661	rimJ	MXAN_3661	MXAN_0332	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Ribosomal protein alanine acetyltransferase; Identified by similarity to SP:P09454; match to protein family HMM PF00583.	0.731
MXAN_3661	rnc	MXAN_3661	MXAN_3762	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.517
MXAN_4010	MXAN_3661	MXAN_4010	MXAN_3661	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.	0.647