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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0345Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510. (619 aa)    
Predicted Functional Partners:
tolB
Tol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF07676.
 
     0.869
pdcA
Penicillin-resistant DD-carboxypeptidase; Identified by similarity to GB:BAA83081.1; match to protein family HMM PF01471; match to protein family HMM PF02557.
    
 0.823
MXAN_5485
Conserved hypothetical protein; Identified by similarity to PIR:F69459.
  
    0.745
MXAN_2873
NHL repeat domain protein; Identified by match to protein family HMM PF01436.
  
     0.701
MXAN_0569
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.642
MXAN_3638
Peptidase, M19 family; Identified by match to protein family HMM PF01244.
  
    0.605
MXAN_1883
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.604
MXAN_6247
Terpene synthase, metal binding domain protein; Identified by match to protein family HMM PF03936.
  
     0.604
MXAN_1870
Putative phage terminase, ATPase subunit.
 
     0.595
MXAN_2194
Putative lipoprotein.
  
     0.594
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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