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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tolBTol-pal system beta propeller repeat protein TolB; Identified by match to protein family HMM PF07676. (366 aa)    
Predicted Functional Partners:
tolR
Transport energizing protein TolR; Also known as adventurous gliding motility protein AglV; identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801.
 
  
 0.934
MXAN_0345
Putative N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.
 
     0.869
MXAN_4581
Peptidoglycan-associated lipoprotein (Pal) family protein; Identified by similarity to SP:P07176; match to protein family HMM PF00691.
 
 
 0.821
MXAN_5753
Transporter, MotA/TolQ/ExbB proton channel family; Identified by similarity to SP:P05828; match to protein family HMM PF01618.
 
  
 0.730
ygbF
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.714
MXAN_5152
Identified by match to protein family HMM PF00691.
 
 
 0.665
MXAN_3000
Putative lipoprotein; Identified by similarity to GB:AAQ57790.1.
  
  
 0.610
aglU
Adventurous gliding motility protein AglU; Identified by similarity to GB:AAO22920.1.
   
  
 0.515
MXAN_5598
OmpA domain protein; Identified by match to protein family HMM PF00691; match to protein family HMM PF02412.
 
 0.515
MXAN_1351
Conserved domain protein; Identified by similarity to GB:AAM29910.1; match to protein family HMM TIGR02276.
  
   0.505
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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