STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0354Pilus biogenesis protein, TadE family; Identified by match to protein family HMM PF07811. (311 aa)    
Predicted Functional Partners:
MXAN_0355
Putative pilus biogenesis operon protein; This and adjacent genes have similarity to the TadE family of pilus biogenesis genes.
       0.773
MXAN_0356
Putative pilus biogenesis operon protein; This gene and two adjacent upstream genes have similarity to the TadE family of pilus biogenesis genes.
       0.773
MXAN_0357
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MXAN_0353
Sigma-54 dependent transcriptional regulator, Fis family; Identified by match to protein family HMM PF00158; match to protein family HMM PF00498; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
  
    0.751
MXAN_4652
Putative Flp pilus assembly protein CpaB; Identified by match to protein family HMM PF06981.
  
  
 0.602
MXAN_4651
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
  
 0.539
rimK
Ribosomal protein S6 modification protein; Identified by similarity to SP:P17116; match to protein family HMM TIGR00768; Belongs to the RimK family.
       0.533
MXAN_4650
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
  
 0.533
MXAN_3107
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF00498.
  
  
 0.442
MXAN_5121
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.429
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.