MXAN_0455 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0455

Conserved domain protein; Identified by similarity to GB:AAO76334.1. (576 aa)

Predicted Functional Partners:

MXAN_7216

0.747

MXAN_6997

0.743

MXAN_0821

0.685

MXAN_6798

0.668

MXAN_0233

0.645

MXAN_0856

0.645

MXAN_0456

0.581

MXAN_1317

0.569

MXAN_0317

0.544

MXAN_6684

0.538

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_0233	MXAN_0455	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	0.645
MXAN_0233	MXAN_0821	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.494
MXAN_0233	MXAN_0856	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	Identified by match to protein family HMM PF00593; match to protein family HMM PF03544; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.422
MXAN_0233	MXAN_6997	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	tonB domain protein; Identified by match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.522
MXAN_0233	MXAN_7216	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656.	0.696
MXAN_0317	MXAN_0455	Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	0.544
MXAN_0455	MXAN_0233	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.645
MXAN_0455	MXAN_0317	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.	0.544
MXAN_0455	MXAN_0456	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Alcohol dehydrogenase, zinc-containing; Identified by similarity to SP:P12311; match to protein family HMM TIGR02822.	0.581
MXAN_0455	MXAN_0821	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.685
MXAN_0455	MXAN_0856	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Identified by match to protein family HMM PF00593; match to protein family HMM PF03544; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.645
MXAN_0455	MXAN_1317	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Putative lipoprotein.	0.569
MXAN_0455	MXAN_6684	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Putative lipoprotein.	0.538
MXAN_0455	MXAN_6798	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	Conserved hypothetical protein; Identified by similarity to PIR:AC1661; match to protein family HMM PF04313.	0.668
MXAN_0455	MXAN_6997	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	tonB domain protein; Identified by match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.743
MXAN_0455	MXAN_7216	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	ICE-like protease (caspase) p20 domain protein; Identified by match to protein family HMM PF00656.	0.747
MXAN_0456	MXAN_0455	Alcohol dehydrogenase, zinc-containing; Identified by similarity to SP:P12311; match to protein family HMM TIGR02822.	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	0.581
MXAN_0821	MXAN_0233	Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	RNA polymerase sigma-70 factor, group 3; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.	0.494
MXAN_0821	MXAN_0455	Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	Conserved domain protein; Identified by similarity to GB:AAO76334.1.	0.685
MXAN_0821	MXAN_0856	Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	Identified by match to protein family HMM PF00593; match to protein family HMM PF03544; match to protein family HMM PF07715; match to protein family HMM TIGR01352.	0.707