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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0472GIY-YIG catalytic domain protein; Identified by match to protein family HMM PF01541. (90 aa)    
Predicted Functional Partners:
MXAN_0473
Conserved domain protein.
       0.723
MXAN_0471
Hypothetical protein; Identified by Glimmer2; putative.
       0.689
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.609
MXAN_0014
Conserved hypothetical protein; Belongs to the methyltransferase superfamily.
  
  
 0.582
MXAN_4132
Conserved domain protein; Identified by similarity to PIR:D96937.
  
  
 0.582
MXAN_0470
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
       0.489
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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