Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MXAN_0533NAD dependent epimerase/dehydratase family; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01409. (391 aa)    
Predicted Functional Partners:
MXAN_0532
Putative transporter; Identified by similarity to SP:O84068.
 
     0.830
MXAN_4405
Peptide synthetase; Identified by match to protein family HMM PF00501.
  
 
 0.824
MXAN_0128
Putative lipoprotein.
      
 0.805
MXAN_0396
Putative serine/threonine protein kinase; Identified by similarity to SP:P54738; match to protein family HMM PF00069.
      
 0.805
MXAN_1277
Putative lipoprotein.
      
 0.805
pilA
Pilin; Makes up the pili which are long filamentous (less than 10 nm thick and up to 10 um long) polarly located appendages. They are required for social (S) motility; Belongs to the N-Me-Phe pilin family.
      
 0.615
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.580
MXAN_3779
Non-ribosomal peptide synthetase/polyketide synthase; Identified by similarity to GB:AAF15891.2; match to protein family HMM PF00109; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; match to protein family HMM TIGR01733.
  
 
 0.579
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.569
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.552
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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