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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0533NAD dependent epimerase/dehydratase family; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01409. (391 aa)    
Predicted Functional Partners:
MXAN_5389
Conserved hypothetical protein; Identified by similarity to GB:AAP26867.1; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01409.
  
  
 
0.908
MXAN_0532
Putative transporter; Identified by similarity to SP:O84068.
 
     0.833
MXAN_4405
Peptide synthetase; Identified by match to protein family HMM PF00501.
  
 
 0.812
MXAN_0128
Putative lipoprotein.
      
 0.806
MXAN_0396
Putative serine/threonine protein kinase; Identified by similarity to SP:P54738; match to protein family HMM PF00069.
      
 0.806
MXAN_1277
Putative lipoprotein.
      
 0.806
MXAN_3932
Polyketide synthase; Identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 0.558
pilA
Pilin; Makes up the pili which are long filamentous (less than 10 nm thick and up to 10 um long) polarly located appendages. They are required for social (S) motility; Belongs to the N-Me-Phe pilin family.
      
 0.541
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 0.536
MXAN_0531
Aminotransferase, class I; Identified by match to protein family HMM PF00155.
     
 0.535
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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