MXAN_0553 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0553

ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061. (248 aa)

Predicted Functional Partners:

MXAN_0554

0.962

MXAN_7067

0.608

MXAN_1377

0.564

MXAN_2397

0.538

MXAN_4931

0.537

MXAN_2755

0.507

MXAN_3287

0.507

MXAN_5317

0.505

MXAN_0552

0.501

MXAN_1597

0.493

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MXAN_0552	MXAN_0553	Identified by similarity to SP:P54738; match to protein family HMM PF00069.	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	0.501
MXAN_0552	MXAN_0554	Identified by similarity to SP:P54738; match to protein family HMM PF00069.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.460
MXAN_0553	MXAN_0552	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	Identified by similarity to SP:P54738; match to protein family HMM PF00069.	0.501
MXAN_0553	MXAN_0554	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.962
MXAN_0553	MXAN_1377	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.564
MXAN_0553	MXAN_1597	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.493
MXAN_0553	MXAN_2397	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	YcaO-like fatty acid binding domain protein; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702.	0.538
MXAN_0553	MXAN_2755	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.507
MXAN_0553	MXAN_3287	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.507
MXAN_0553	MXAN_4931	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	Hypothetical protein; Identified by Glimmer2; putative.	0.537
MXAN_0553	MXAN_5317	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	Putative daunorubicin resistance ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005.	0.505
MXAN_0553	MXAN_7067	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	Identified by match to protein family HMM PF00881.	0.608
MXAN_0554	MXAN_0552	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by similarity to SP:P54738; match to protein family HMM PF00069.	0.460
MXAN_0554	MXAN_0553	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	0.962
MXAN_1377	MXAN_0553	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	0.564
MXAN_1597	MXAN_0553	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	0.493
MXAN_2397	MXAN_0553	YcaO-like fatty acid binding domain protein; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702.	ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061.	0.538
MXAN_2397	MXAN_2755	YcaO-like fatty acid binding domain protein; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.616
MXAN_2397	MXAN_3287	YcaO-like fatty acid binding domain protein; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702.	CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.	0.616
MXAN_2397	MXAN_7067	YcaO-like fatty acid binding domain protein; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702.	Identified by match to protein family HMM PF00881.	0.654