Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MXAN_0553ABC transporter, permease protein, ABC-2 family; Identified by match to protein family HMM PF01061. (248 aa)    
Predicted Functional Partners:
MXAN_0554
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.961
MXAN_7067
Identified by match to protein family HMM PF00881.
  
  
 0.614
MXAN_1377
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.578
MXAN_2397
YcaO-like fatty acid binding domain protein; Identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702.
  
  
 0.573
MXAN_4931
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.573
MXAN_2755
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
  
 0.545
MXAN_3287
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
  
 0.545
MXAN_5317
Putative daunorubicin resistance ABC transporter, ATP-binding subunit; Identified by match to protein family HMM PF00005.
  
 0.523
MXAN_1597
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.512
MXAN_0552
Identified by similarity to SP:P54738; match to protein family HMM PF00069.
  
    0.504
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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