close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0607Identified by match to protein family HMM PF00171. (471 aa)    
Predicted Functional Partners:
MXAN_5629
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
 
 0.928
sdhA
Succinate dehydrogenase, flavoprotein subunit; Identified by similarity to SP:P08065; match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM TIGR01811.
   
 0.926
frdA
Fumarate reductase, flavoprotein subunit; Identified by similarity to GB:AAO42600.1; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR01811.
   
 0.926
sdhB
Succinate dehydrogenase, iron-sulfur protein; Identified by similarity to SP:P08066; match to protein family HMM PF00037; match to protein family HMM TIGR00384.
   
 
 0.915
frdB
Fumarate reductase, iron-sulfur protein; Identified by match to protein family HMM PF00037.
   
 
 0.915
MXAN_7405
Proline dehydrogenase; Identified by match to protein family HMM PF01619.
 
 0.910
sdhC
Succinate dehydrogenase cytochrome b558 subunit; Identified by similarity to SP:P08064.
   
 
  0.905
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.901
frdC
Fumarate reductase, cytochrome b subunit; Identified by match to protein family HMM TIGR02046.
     
  0.900
citZ
Citrate synthase; Identified by similarity to SP:P39120.
  
 0.871
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
Server load: low (24%) [HD]