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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0769Hypothetical protein; Identified by Glimmer2; putative. (168 aa)    
Predicted Functional Partners:
MXAN_0768
Kinase, pfkB family; Identified by match to protein family HMM PF00294.
       0.768
MXAN_5255
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.562
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.517
MXAN_2551
Putative lipoprotein.
  
     0.494
MXAN_1395
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.491
MXAN_0770
Iron ABC transporter, periplasmic iron-binding protein; Identified by similarity to SP:P17940; match to protein family HMM PF01547.
       0.450
MXAN_0771
Iron ABC transporter, permease protein; Identified by similarity to SP:P21409; match to protein family HMM PF00528.
       0.450
MXAN_0839
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.445
MXAN_6658
Putative lipoprotein.
  
     0.442
MXAN_2268
Putative permease; Identified by match to protein family HMM PF02687.
  
     0.425
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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