STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_0887Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (220 aa)    
Predicted Functional Partners:
MXAN_0888
Identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409.
       0.727
MXAN_2711
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.602
MXAN_0214
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.507
MXAN_5547
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.474
MXAN_1654
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.460
MXAN_4263
Transcriptional regulator, TetR family; Identified by similarity to GB:AAL28105.1; match to protein family HMM PF00440.
  
     0.430
MXAN_5356
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.408
MXAN_0889
RCC1 repeat domain protein; Identified by match to protein family HMM PF00415.
  
    0.402
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.