MXAN_0898 protein (Myxococcus xanthus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MXAN_0898

Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143. (308 aa)

Predicted Functional Partners:

crtI

0.990

MXAN_4052

0.981

carC

0.979

MXAN_0900

0.976

MXAN_0730

0.963

MXAN_0897

0.958

crtB

0.927

MXAN_0902

0.901

MXAN_0899

0.778

MXAN_0901

0.773

Your Current Organism:

Myxococcus xanthus

NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MXAN_0730	MXAN_0898	MXAN_0730	MXAN_0898	Identified by match to protein family HMM PF00891.	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	0.963
MXAN_0897	MXAN_0898	MXAN_0897	MXAN_0898	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	0.958
MXAN_0897	MXAN_0899	MXAN_0897	MXAN_0899	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Putative carotenoid biosynthesis protein; Identified by similarity to GB:CAA79960.1.	0.781
MXAN_0897	MXAN_0900	MXAN_0897	MXAN_0900	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Putative membrane protein.	0.773
MXAN_0897	MXAN_0901	MXAN_0897	MXAN_0901	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Conserved hypothetical protein; Identified by similarity to PIR:S68195.	0.773
MXAN_0897	MXAN_0902	MXAN_0897	MXAN_0902	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Acyltransferase domain protein; Identified by match to protein family HMM PF01553.	0.930
MXAN_0897	crtB	MXAN_0897	MXAN_0896	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	0.986
MXAN_0897	crtI	MXAN_0897	MXAN_0895	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.746
MXAN_0898	MXAN_0730	MXAN_0898	MXAN_0730	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Identified by match to protein family HMM PF00891.	0.963
MXAN_0898	MXAN_0897	MXAN_0898	MXAN_0897	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.958
MXAN_0898	MXAN_0899	MXAN_0898	MXAN_0899	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Putative carotenoid biosynthesis protein; Identified by similarity to GB:CAA79960.1.	0.778
MXAN_0898	MXAN_0900	MXAN_0898	MXAN_0900	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Putative membrane protein.	0.976
MXAN_0898	MXAN_0901	MXAN_0898	MXAN_0901	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Conserved hypothetical protein; Identified by similarity to PIR:S68195.	0.773
MXAN_0898	MXAN_0902	MXAN_0898	MXAN_0902	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Acyltransferase domain protein; Identified by match to protein family HMM PF01553.	0.901
MXAN_0898	MXAN_4052	MXAN_0898	MXAN_4052	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Putative phytoene dehydrogenase; Identified by similarity to SP:P21685.	0.981
MXAN_0898	carC	MXAN_0898	MXAN_7517	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Phytoene dehydrogenase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM PF07992; match to protein family HMM TIGR02734.	0.979
MXAN_0898	crtB	MXAN_0898	MXAN_0896	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Phytoene synthetase; Identified by similarity to GB:CAA79957.1; match to protein family HMM PF00494.	0.927
MXAN_0898	crtI	MXAN_0898	MXAN_0895	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	Phytoene desaturase; Identified by similarity to SP:Q02861; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.990
MXAN_0899	MXAN_0897	MXAN_0899	MXAN_0897	Putative carotenoid biosynthesis protein; Identified by similarity to GB:CAA79960.1.	Hydroxyneurosporene dehydrogenase; Identified by similarity to GB:CAA79958.1; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR02734.	0.781
MXAN_0899	MXAN_0898	MXAN_0899	MXAN_0898	Putative carotenoid biosynthesis protein; Identified by similarity to GB:CAA79960.1.	Neurosporene hydroxylase; Identified by similarity to GB:CAA79959.1; match to protein family HMM PF07143.	0.778